Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015794800.1_cds_XP_016440663.1_3531
CDS Infomation

[gene=LOC107766390] [db_xref=GeneID:107766390] [protein=putative pentatricopeptide repeat-containing protein At5g37570 isoform X1] [protein_id=XP_016440663.1] [location=complement(join(9454..9459,9995..11662))] [gbkey=CDS]
Sequence

ATGTCTTTGATTAGCAAATGCTTAACAACTTCTGCTGAACCATCATTTTTACTGTCCATA
CCGCTTCTGAATCTGTTGAGAGCGTGCAGAACTGTCAAAAACCTTCAGCAAGTCCACACC
CACATAATCCAAAAAGGCTACGAGCAAGACCATTTTATCATCAACCAGTTTATATCGCTC
TGTAACACCTTTTCCTCCGATGTCTCTTATGCGACAAGTGTATTTGAGCGTGTCATTCAG
CCCAATGTTTATGTCTGGAATACATTGATTAAAGGGTATAGCAAACATTCATCCTTTGCT
GATTGCTTCCTTATCTTGAAACAAATGAAAAGAAGTATGAATGTGATACCTGATAAGTAT
ACTTTTCCTTCGCTGGTCAAATCTTGTTCTAGTGCCTTGGCTTTGAGGGATGGTCAGGCC
GTTCATGGGTTGATAGTTAGATACGGAACTGATAGCGATGTATTTGTAGGATCCAGCTTG
ATTGATCTTTATGGGAAGTGCAATCAGATTGAGTATGCACGTAGAATCTTTGATGAAATG
CCTCTAAGGAATGAGGTTACATGGACTGCTATGGTTGTTGGCTATATATATTTTGGTGAT
TTATCGCAAGCAAGTAAATTATTTGATGAAATGCCCCATAAAAATATAGCCTCGTGGAAT
GCAATGATTAGTGCATTCGTGAAGTTTGGTGATTTGCTTAGTGCCAGGAAATTGTTTGAT
AGTATGACTGGCAAAGATGTGGTATCTTTTACTACTATGATTGATGGTTATGCTAAGGCT
GGTGACATGGCATCAGCGAGGTTCTTGTTCGATCAGCCTTTTGACAGAGACATAATATCC
TGGTCTGCTTTGATATCTGGGTACGCTCAGAACGGGCAGCCCAATGAAGCTCTCAAAATT
TTCCATGAAATGTTGTCAATGAATGTTAGGCCAGATGAGTTTATAATGGTAAGTTTGATG
TGTGCGTGTTCCCAATTAGGTCGCCTGGACTTGGCAAATTGGGTAGAACATTATATGAGC
CAGAATTCATTTGATCTTAATCAAGTGCATATAGCTGCAGCCCTTGTGGATATGAATGCT
AAATGTGGGAATATGGAAAGGGCGACAATGCTGTTTGAGGGGATGCCTAAGCGTGATCTA
GTATCATACTGTTCAATGATACAAGGCCTGTCTATTCATGGTTGCGGTTCTCAGGCTGTA
GTTTTCTTTGATAGGATGCTGAACGAGGGGCTTGTGCCTGATGATGTTTCCCTTAAGGTA
ATTCTGACTGCTTGTAGTCGTGCAGAACTTGTTAAGGAGGGTTGCCGCATCTTTAATCTA
ATGATAAACAAATATCCTGCTAAGCCTTCTCCGGATCATTATGCATGTGTAGTAGACCTT
CTTGGAAGATCAGGAAAACTTAAAGATGCGTATGAACTTATAAGGTCAATGCCCACTGAA
CCTCATGCTGGTGCCTGGGGCGCACTTCTAGGGGCTTGTAAGCTACACTGTGACATTGAG
GTAGGGGAGGAGGTATCCCATAGACTTTTTGAACTTGAGCCTCAAAATACTGGTAATTAC
GTGCTTTTGTCAGACATCTATGCTGCGGCAAATCGGTGGTTAGATGTTGCGTTGTTGCGT
CAGAAAATGAGTGAGAAGGGTCTTAAGAAGATACCTGGTTGCAGTTGGGTATAA

Peptide Sequence

PEP ID

XP_016440663.1
PEP Infomation

PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 isoform X1 [Nicotiana tabacum]
Sequence

MSLISKCLTTSAEPSFLLSIPLLNLLRACRTVKNLQQVHTHIIQKGYEQDHFIINQFISL
CNTFSSDVSYATSVFERVIQPNVYVWNTLIKGYSKHSSFADCFLILKQMKRSMNVIPDKY
TFPSLVKSCSSALALRDGQAVHGLIVRYGTDSDVFVGSSLIDLYGKCNQIEYARRIFDEM
PLRNEVTWTAMVVGYIYFGDLSQASKLFDEMPHKNIASWNAMISAFVKFGDLLSARKLFD
SMTGKDVVSFTTMIDGYAKAGDMASARFLFDQPFDRDIISWSALISGYAQNGQPNEALKI
FHEMLSMNVRPDEFIMVSLMCACSQLGRLDLANWVEHYMSQNSFDLNQVHIAAALVDMNA
KCGNMERATMLFEGMPKRDLVSYCSMIQGLSIHGCGSQAVVFFDRMLNEGLVPDDVSLKV
ILTACSRAELVKEGCRIFNLMINKYPAKPSPDHYACVVDLLGRSGKLKDAYELIRSMPTE
PHAGAWGALLGACKLHCDIEVGEEVSHRLFELEPQNTGNYVLLSDIYAAANRWLDVALLR
QKMSEKGLKKIPGCSWV

Transcript Sequence

Gene sequence data has not been registered.